Restructure for symlink

This change makes it easier to recursively copy these config files into
a real home directory and also gets rid of empty folders

vim/.vim/notes.md

@@ -1,28 +0,0 @@
-Helpful Commands
-----------------
-
-:retab
-	replaces all tab characters with spaces
-:Helptags
-    generates helptags for all installed plugins
-:help plugin
-    give help pages for the plugin
-gcc
-    comments lines
-q:
-    history in a buffer
-q?
-    search history in a buffer
-
-Installed Plugins
------------------
-can be found in :help
-
-
-Custom Bindings
----------------
-
-Research
---------
-https://jakobgm.com/posts/vim/git-integration/
-https://thoughtbot.com/upcase/videos/git-vim-and-git